I've never seen that before, but is it that the midside nodes aren't connected to their adjacent elements? If so, then perhaps mesh it as linear elements and convert to quadratic afterwards.
Otherwise, I would try Gmsh which is generally better than the built-in Netgen and if you use the GUI, it's more informative about what's wrong.
Turns out this is a bug in Mecway, not Netgen. Thanks for discovering it. It happens with this combination of settings: Surface mesh, Quad dominant, Quadratic elements, and not Fit midside nodes to geometry and only if the resulting mesh has a mixture of quad and tri elements.
You can also correct it by using Mesh tools -> Merge nearby nodes after meshing.
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Otherwise, I would try Gmsh which is generally better than the built-in Netgen and if you use the GUI, it's more informative about what's wrong.
You can also correct it by using Mesh tools -> Merge nearby nodes after meshing.